Metaproteomic characterization of dissolved organic matter in coastal seawater     

Mitsuhiro Yoshida  Keitaro Yamamoto  Satoru Suzuki 《Journal of Oceanography》2014,70(1):105-113

We performed a comprehensive metaproteomic analysis of the dissolved organic matter (DOM) in Japanese coastal waters using liquid chromatography–tandem mass spectrometry and demonstrated that these proteomes were characterized by proteins with various functions, including metabolic enzymes, membranes, and photosynthetic proteins. The protein sources included cyanobacteria, heterotrophic bacteria, and eukaryotic phytoplankton. Most of the components were similar among samples and also similar to pelagic components. We also observed differences in the compositions of the microbial communities of origin among the different dissolved protein samples and differences in the relative abundance of specific dissolved protein types (e.g., cytoskeletal proteins), possibly indicating potential dynamics in the coastal DOM pool.  相似文献   

Differences in abundance and distribution of Alexandrium cysts in Sendai Bay,northern Japan,before and after the tsunami caused by the Great East Japan Earthquake     

Takashi Kamiyama  Hiroyuki Yamauchi  Satoshi Nagai  Mineo Yamaguchi 《Journal of Oceanography》2014,70(2):185-195

The tsunami caused by the Great East Japan Earthquake on 11 March 2011 greatly influenced the coastal benthic environment on the northern Pacific coast of Japan. We used the direct count method to investigate changes in the abundance and distribution of Alexandrium (Alexandrium tamarense and Alexandrium catenella) cysts before and after the tsunami in Sendai Bay. Densities of Alexandrium cysts in sediments collected in summer 2011 ranged from 0 to 8,190 cysts cm^?3. In the western part of the bay, the density increased greatly after the tsunami, the highest density being approximately 10 times the density recorded in 2005. Molecular identification of single cysts with multiplex polymerase chain reaction (PCR) showed that Alexandrium tamarense dominated the cyst population in the southwestern part of the bay in 2011. Furthermore, accumulation of cysts on the surface sediment after disturbance of the sediment was confirmed by a laboratory experiment. The main factor causing the drastic changes in abundance and distribution of Alexandrium cysts after the earthquake was considered to be vertical and horizontal redistribution of the cysts in sediments after the tsunami.  相似文献   

High-resolution observations of dissolved isoprene in surface seawater in the Southern Ocean during austral summer 2010–2011     

Sohiko Kameyama  Satoshi Yoshida  Hiroshi Tanimoto  Satoshi Inomata  Koji Suzuki  Hisayuki Yoshikawa-Inoue 《Journal of Oceanography》2014,70(3):225-239

We measured dissolved isoprene (2-methyl-1,3-butadiene; C₅H₈) concentrations in a broad area of the southern Indian Ocean and in the Indian sector of the Southern Ocean from 35°S to 64°S and from 37°E to 111°E during austral summer 2010–2011. Isoprene concentrations were continuously measured by use of a proton-transfer-reaction mass spectrometer combined with a bubbling-type equilibrator. Concentrations of isoprene and its emission flux throughout the study period ranged from 0.2 to 395 pmol L^?1 and from 181 to 313 nmol m^?2 day^?1, respectively, the averages being generally higher than those of previous studies. Although we found a significant linear positive relationship between isoprene and chlorophyll-a concentrations (r ² = 0.37, n = 36, P < 0.001), the correlation coefficient was lower than previously reported. In contrast, in the high-latitude area (>53°S) we identified a significant negative correlation (r ² = 0.59, n = 1263, P < 0.001) between isoprene and the temperature-normalized partial pressure of carbon dioxide (n-pCO₂), used as an indicator of net community production in this study. This suggests that residence times and factors controlling variations in isoprene and n-pCO₂ are similar within a physically stable water column.  相似文献   

Primary melt from Sannome-gata volcano,NE Japan arc: constraints on generation conditions of rear-arc magmas     

Takeshi?KuritaniEmail author  Takeyoshi?Yoshida  Jun-Ichi?Kimura  Toshiro?Takahashi  Yuka?Hirahara  Takashi?Miyazaki  Ryoko?Senda  Qing?Chang  Yoshinori?Ito 《Contributions to Mineralogy and Petrology》2014,167(2):969

The conditions under which rear-arc magmas are generated were estimated using primary basalts from the Sannome-gata volcano, located in the rear of the NE Japan arc. Scoriae from the volcano occur with abundant crustal and mantle xenoliths, suggesting that the magma ascended rapidly from the upper mantle. The scoriae show significant variations in their whole-rock compositions (7.9–11.1 wt% MgO). High-MgO scoriae (MgO > ~9.5 wt%) have mostly homogeneous ⁸⁷Sr/⁸⁶Sr ratios (0.70318–0.70320), whereas low-MgO scoriae (MgO < ~9 wt%) have higher ⁸⁷Sr/⁸⁶Sr ratios (>0.70327); ratios tend to increase with decreasing MgO content. The high-MgO scoriae are aphyric, containing ~5 vol% olivine microphenocrysts with Mg# [100 × Mg/(Mg + Fe²⁺)] of up to 90. In contrast, the low-MgO scoriae have crustal xenocrysts of plagioclase, alkali feldspar, and quartz, and the mineralogic modes correlate negatively with whole-rock MgO content. On the basis of these observations, it is inferred that the high-MgO scoriae represent primary or near-primary melts, while the low-MgO scoriae underwent considerable interaction with the crust. Using thermodynamic analysis of the observed petrological features of the high-MgO scoriae, the eruption temperature of the magmas was constrained to 1,160–1,220 °C. Given that the source mantle was depleted MORB-source mantle, the primary magma was plausibly generated by ~7 % melting of a garnet-bearing spinel peridotite; taking this into consideration, and considering the constraints of multi-component thermodynamics, we estimated that the primary Sannome-gata magma was generated in the source mantle with 0.5–0.6 wt% H₂O at 1,220–1,230 °C and at ~1.8 GPa, and that the H₂O content of the primary magma was 6–7 wt%. The rear-arc Sannome-gata magma was generated by a lower degree of melting of the mantle at greater depths and lower temperatures than the frontal-arc magma from the Iwate volcano, which was also estimated to be generated by ~15 % melting of the source mantle with 0.6–0.7 wt% H₂O at ~1,250 °C and at ~1.3 GPa.  相似文献   

Voids in a ΛCDM universe     

Jörg M. Colberg  Ravi K. Sheth  Antonaldo Diaferio  Liang Gao  Naoki Yoshida 《Monthly notices of the Royal Astronomical Society》2005,360(1):216-226

We study the formation and evolution of voids in the dark matter distribution using various simulations of the popular Λ cold dark matter cosmogony. We identify voids by requiring them to be regions of space with a mean overdensity of −0.8 or less – roughly the equivalent of using a spherical overdensity group finder for haloes. Each of the simulations contains thousands of voids. The distribution of void sizes in the different simulations shows good agreement when differences in particle and grid resolution are accounted for. Voids very clearly correspond to minima in the smoothed initial density field. Apart from a very weak dependence on the mass resolution, the rescaled mass profiles of voids in the different simulations agree remarkably well. We find a universal void mass profile of the form  ρ(< r )/ρ( r _eff) ∝ exp[( r / r _eff)^α]  , where r _eff is the effective radius of a void and  α∼ 2  . The mass function of haloes in voids is steeper than that of haloes that populate denser regions. In addition, the abundances of void haloes seem to evolve somewhat more strongly between redshifts ∼1 and 0 than the global abundances of haloes.  相似文献   

Early structure formation in quintessence models and its implications for cosmic reionization from first stars     

U. Maio  K. Dolag  M. Meneghetti  L. Moscardini  N. Yoshida  C. Baccigalupi  M. Bartelmann  F. Perrotta 《Monthly notices of the Royal Astronomical Society》2006,373(2):869-878

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Cosmic reionization by stellar sources: population III stars     

Aaron Sokasian  Naoki Yoshida  Tom Abel  Lars Hernquist  Volker Springel 《Monthly notices of the Royal Astronomical Society》2004,350(1):47-65

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Estimation of net accumulation rate at a Patagonian glacier by ice core analyses using snow algae     

Shiro Kohshima  Nozomu Takeuchi  Jun Uetake  Takayuki Shiraiwa  Ryu Uemura  Naohiro Yoshida  Sumito Matoba  Maria Angelica Godoi 《Global and Planetary Change》2007,59(1-4):236

Snow algae in a 45.97-m-long ice core from the Tyndall Glacier (50°59′05″S, 73°31′12″W, 1756 m a.s.l.) in the Southern Patagonian Icefield were examined for potential use in ice core dating and estimation of the net accumulation rate. The core was subjected to visual stratigraphic observation and bulk density measurements in the field, and later to analyses of snow algal biomass, water isotopes (¹⁸O, D), and major dissolved ions. The ice core contained many algal cells that belonged to two species of snow algae growing in the snow near the surface: Chloromonas sp. and an unknown green algal species. Algal biomass and major dissolved ions (Na⁺, K⁺, Mg²⁺, Ca²⁺, Cl⁻, SO₄²⁻) exhibited rapid decreases in the upper 3 m, probably owing to melt water elution and/or decomposition of algal cells. However, seasonal cycles were still found for the snow algal biomass, ¹⁸O, D-excess, and major ions, although the amplitudes of the cycles decreased with depth. Supposing that the layers with almost no snow algae were the winter layers without the melt water essential to algal growth, we estimated that the net accumulation rate at this location was 12.9 m a^− 1 from winter 1998 to winter 1999, and 5.1 m from the beginning of winter to December 1999. These estimates are similar to the values estimated from the peaks of ¹⁸O (17.8 m a^− 1 from summer 1998 to summer 1999 and 11.0 m from summer to December 1999) and those of D-excess (14.7 m a^− 1 from fall 1998 to fall 1999 and 8.6 m a^− 1 from fall to December 1999). These values are much higher than those obtained by past ice core studies in Patagonia, but are of the same order of magnitude as those predicted from various observations at ablation areas of Patagonian glaciers.  相似文献   

http://www.sciencedirect.com/science/article/pii/S1674987114000917     

Miyuki Tahata  Yusuke Sawaki  Yuichiro Ueno  Manabu Nishizawa  Naohiro Yoshida  Toshikazu Ebisuzaki  Tsuyoshi Komiya  Shigenori Maruyama 《地学前缘(英文版)》2015,6(1):121-136

Important ecological changes of the Earth(oxidization of the atmosphere and the ocean) increase in nutrient supply due to the break-up of the super continent(Rodinia) and the appearance of multi-cellular organisms(macroscopic algae and metazoan) took place in the Ediacaran period,priming the Cambrian explosion.The strong perturbations in carbon cycles in the ocean are recorded as excursions in carbonate and organic carbon isotope ratio(δ~(13)C_(carb) and δ~(13)C_(org)) from the Ediacaran through early Cambrian periods.The Ediacaran-early Cambrian sediment records of δ~(13)C_(carb) and δ~(13)C_(org),obtained from the drill-core samples in Three Gorges in South China,are compared with the results of numerical simulation of a simple one-zone model of the carbon cycle of the ocean,which has two reservoirs(i.e.,dissolved organic carbon(DOC) and dissolved inorganic carbon(DIC).The fluxes from the reservoirs are assumed to be proportional to the mass of the carbon reservoirs.We constructed a model,referred to here as the Best Fit Model(BFM),which reproduce δ~(13)C_(carb) and δ~(13)C_(org) records in the Ediacaran-early Cambrian period noted above.BFM reveals that the Shuram excursion is related to three major changes in the carbon cycle or the global ecological system of the Earth:(1) an increase in the coefficient of remineralization by a factor of ca.100,possibly corresponding to a change in the dominant metabolism from anaerobic respiration to aerobic respiration,(2) an increase of carbon fractionation index from 25‰ to 33‰,possibly corresponding to the change in the primary producer from rock-living cyanobacteria to free-living macro algae,and(3) an increase in the coefficient of the organic carbon burial by a factor of ca.100,possibly corresponding to the onset of a biological pump driven by the flourishing metazoan and zooplankton.The former two changes took place at the start of the Shuram excursion,while the third occurred at the end of the Shuram excursion.The other two excursions are explained by the tentative decrease in primary production due to cold periods,which correspond to the Gaskiers(ca.580 Ma) and Bikonor(ca.542 Ma) glaciations.  相似文献   

http://www.sciencedirect.com/science/article/pii/S167498711300162X     

Fumiko Tajima  Masaki Yoshida  Eiji Ohtani 《地学前缘(英文版)》2015,6(1):79-93

Seismic observations have shown structural variation near the base of the mantle transition zone(MTZ)where subducted cold slabs,as visualized with high seismic speed anomalies(HSSAs),flatten to form stagnant slabs or sink further into the lower mantle.The different slab behaviors were also accompanied by variation of the "660 km" discontinuity depths and low viscosity layers(LVLs) beneath the MTZ that are suggested by geoid inversion studies.We address that deep water transport by subducted slabs and dehydration from hydrous slabs could affect the physical properties of mantle minerals and govern slab dynamics.A systematic series of three-dimensional numerical simulation has been conducted to examine the effects of viscosity reduction or contrast between slab materials on slab behaviors near the base of the MTZ.We found that the viscosity reduction of subducted crustal material leads to a separation of crustal material from the slab main body and its transient stagnation in the MTZ.The once trapped crustal materials in the MTZ eventually sink into the lower mantle within 20-30 My from the start of the plate subduction.The results suggest crustal material recycle in the whole mantle that is consistent with evidence from mantle geochemistry as opposed to a two-layer mantle convection model.Because of the smaller capacity of water content in lower mantle minerals than in MTZ minerals,dehydration should occur at the phase transformation depth,~660 km.The variation of the discontinuity depths and highly localized low seismic speed anomaly(LSSA) zones observed from seismic P waveforms in a relatively high frequency band(~1 Hz) support the hypothesis of dehydration from hydrous slabs at the phase boundary.The LSSAs which correspond to dehydration induced fluids are likely to be very local,given very small hydrogen(H~+) diffusivity associated with subducted slabs.The image of such local LSSA zones embedded in HSSAs may not be necessarily captured in tomography studies.The high electrical conductivity in the MTZ beneath the northwestern Pacific subduction zone does not necessarily require a broad range of high water content homogeneously.  相似文献